Installing ProFlex - GCC4
- To determine what version of GCC you are running, type gcc -v. If this reports gcc version 3.x.x, then you can skip the rest of these directions. If this reports gcc version 4.x.x, follow the instructions below.
- Install GCC version 3. This is typically found in the compat-gcc packages in the repositories. For example, on Red Hat based machines, install the compat-gcc-34, compat-gcc-34-c++, and compat-gcc-34-g77 packages. To confirm that GCC version 3 has been installed, type gcc34 -v at the command line. This should report gcc version 3.4.x.
- Edit the file proflexv5.0/prog/first/src/c++/Makefile. Change line 32 from "CPP = g++" to "CPP = g++34".
- Continue with the ProFlex installation instructions on the install page.
Reference: Keating KS, Flores SC, Gerstein MB, Kuhn LA (2009). StoneHinge: Hinge Prediction by Network Analysis of Individual Protein Structures. Protein Science 18: 359-371.